Fusion Glycoprotein F0

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fusion Glycoprotein F0
  Conformer 1
(PDB) 		5wb0 (F)
  Conformer 2
(PDB) 		5l1x (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 250 2.54   180 - 429
2 20 2.61   160 - 179

Sequence


           ________________________________________________________________________________________________________________________ 
 5wb0(F) : LKESYLEESCSTITEGYLSVLRTGWYTNVFTLEVGDVENLTCADGPSLIKTELDLTKSALRELRTVSADQLAfVLGAIALGVATAAAVTAGVAIAKTIRLESEVTAIKNALKKTNEAVST 
         :                                                                                                                          
 5l1x(F) : ***********************************************************************************TAAAVTAGVAIAKTIRLESEVTAIKNALKKTNEAVST 
           ________________________________________________________________________________________________________________________ 

           _________________________178____________________________________________________________________________________________ 
 5wb0(F) : LGNGVRVLATAVRELKDFVSKNLTRAINKNKCDIPDLKMAVSFSQFNRRFLNVVRQFSDNAGITPAISLDLMTDAELARAVSNMPTSAGQIKLMLENRAMVRRKGFGILIGVYGSSVIYM 
         :                                                                                                                          
 5l1x(F) : LGNGVRVLATAVRELKDFVSKNLTRAINKNKCDIADLKMAVSFSQFNRRFLNVVRQFSDNAGITPAISLDLMTDAELARAVSNMPTSAGQIKLMLENRAMVRRKGFGILIGVYGSSVIYM 
           _________________________178____________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5wb0(F) : VQLPIFGVIDTPCWIVKAAPSCSEKKGNYACLLREDQGWYCQNAGSTVYYPNEKDCETRGDHVFCDTAAGINVAEQSKECNINISTTNYPCKVSTGRHPISMVALSPLGALVACYKGVSC 
         :                                                                                                                          
 5l1x(F) : VQLPIFGVIDTPCWIVKAAPSCSEKKGNYACLLREDQGWYCQNAGSTVYYPNEKDCETRGDHVFCDTAAGINVAEQSKECNINISTTNYPCKVSTGRHPISMVALSPLGALVACYKGVSC 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________                             
 5wb0(F) : SIGSNRVGIIKQLNKGCSYITNQDADTVTIDNTVYQLSKVEGEQHVIKGRPVSSSFDPVKFPEDQFNVALDQVFESIENSQA**********                             
         :                                                                                                                          
 5l1x(F) : SIGSNRVGIIKQLNKGCSYITNQDADTVTIDNTVYQLSKVEGEQHVIKGRPVSSSFDPVKFPEDQFNVALDQVFESIENSQALVDQSNRILS                             
           ____________________________________________________________________________________________                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		155.4
Translation
(A) 		-10.2
Closure
(%) 		69.4
Bending Residues
( green ) 		  178 - 186
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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