Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 2
  Conformer 1
(PDB) 		4u2r (A)
  Conformer 2
(PDB) 		4u2r (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 154 0.36   6 - 110   194 - 198   216 - 259
2 100 0.29   111 - 193   199 - 215

Sequence


           ___________________________________________________________________________________________________________110__________ 
 4u2r(A) : **NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP 
         :                                                                                                                          
 4u2r(B) : GANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP 
           ___________________________________________________________________________________________________________110__________ 

           ______________________________________________________________________193__198____________213___________________________ 
 4u2r(A) : IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLK 
         :                                                                                                                          
 4u2r(B) : IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLK 
           ______________________________________________________________________193__198____________213___________________________ 

           _______________________                                                                                                  
 4u2r(A) : LSEQGVLDKLKNKWWYDKGEC**                                                                                                  
         :                                                                                                                          
 4u2r(B) : LSEQGVLDKLKNKWWYDKGECGS                                                                                                  
           _______________________                                                                                                  

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.7
Translation
(A) 		0.0
Closure
(%) 		85.2
Bending Residues
( green ) 		  110 - 111
  193 - 194
  198 - 199
  213 - 220
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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