Glycerol-3-Phosphate Cytidylyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycerol-3-Phosphate Cytidylyltransferase
  Conformer 1
(PDB) 		1coz (B)
  Conformer 2
(PDB) 		1n1d (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 54 0.38   508 - 531   554 - 583
2 25 0.25   584 - 608

Sequence


           _______________________________________________________________________________582______________________________________ 
 1coz(B) : MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMGDDWEGKFDFLKDQCEVVYLPRTEGISTT 
         :                                                                                                                          
 1n1d(A) : MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMGDDWEGKFDFLKDQCEVVYLPRTEGISTT 
           ________________________________________________________________________________82______________________________________ 

           ______                                                                                                                   
 1coz(B) : KIKEEI                                                                                                                   
         :                                                                                                                          
 1n1d(A) : KIKEEI                                                                                                                   
           ______                                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.5
Translation
(A) 		-0.3
Closure
(%) 		97.1
Bending Residues
( green ) 		  582 - 585
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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