Hemin-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hemin-Binding Periplasmic Protein
  Conformer 1
(PDB) 		3nu1 (A)
  Conformer 2
(PDB) 		3md9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 143 0.33   28 - 156   260 - 273
2 106 0.72   157 - 259   274 - 276

Sequence


           ________________________________________________________________________________________________________________________ 
 3nu1(A) : AERIVTIGGDVTEIAYALGAGDEIVARDSTSQQPQAAQKLPDVGYMRTLNAEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVATALHQTEKGQKLIEDY 
         :                                                                                                                          
 3md9(A) : AERIVTIGGDVTEIAYALGAGDEIVARDSTSQQPQAAQKLPDVGYMRTLNAEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVATALHQTEKGQKLIEDY 
           ________________________________________________________________________________________________________________________ 

           ___151_________________________________________________________________________________________________________259______ 
 3nu1(A) : QQRLAAVNKTPLPVKVLFVMSHGGLTPMAAGQNTAADAMIRAAGGSNAMQGFSRYRPLSQEGVIASAPDLLLITTDGVKALGSSENIWKLPGMALTPAGKHKRLLVVDDMALLGFGLETP 
         :                                                                                                                          
 3md9(A) : QQRLAAVNKTPLPVKVLFVMSHGGLTPMAAGQNTAADAMIRAAGGSNAMQGFSRYRPLSQEGVIASAPDLLLITTDGVKALGSSENIWKLPGMALTPAGKHKRLLVVDDMALLGFGLETP 
           ___151_________________________________________________________________________________________________________259______ 

           __270_________                                                                                                           
 3nu1(A) : QVLAQLREKMEQMQ                                                                                                           
         :                                                                                                                          
 3md9(A) : QVLAQLREKMEQM*                                                                                                           
           __270_________                                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.9
Translation
(A) 		0.0
Closure
(%) 		0.1
Bending Residues
( green ) 		  151 - 157
  259 - 261
  270 - 275
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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