Lipopolysaccharide Heptosyltransferase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lipopolysaccharide Heptosyltransferase 1
  Conformer 1
(PDB) 		2gt1 (A)
  Conformer 2
(PDB) 		2h1f (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 169 0.43   3 - 180   244 - 249
2 127 0.58   181 - 243   250 - 321

Sequence


           ________________________________________________________________________________________________________________________ 
 2gt1(A) : MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAKNYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAR 
         :                                                                                                                          
 2h1f(B) : MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRK----------rKAFREALQAKNYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAR 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________180____________________________________________________________ 
 2gt1(A) : EPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLP 
         :                                                                                                                          
 2h1f(B) : EPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTN-----gEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLP 
           _________________________________________________________180____________________________________________________________ 

           243___________________________________________________________________________________                                   
 2gt1(A) : KMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEKA***                                   
         :                                                                                                                          
 2h1f(B) : KMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDP--------nQMVCRAPGNELSQLTANAVKQFIEENAEKAAMI                                   
           243___________________________________________________________________________________                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.3
Translation
(A) 		0.0
Closure
(%) 		17.3
Bending Residues
( green ) 		  180 - 181
  243 - 244
  246 - 250
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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