Manganese-Dependent Inorganic Pyrophosphatase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Manganese-Dependent Inorganic Pyrophosphatase
  Conformer 1
(PDB) 		1k23 (A)
  Conformer 2
(PDB) 		1wpm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 183 0.47   4 - 189
2 115 0.6   190 - 304

Sequence


           ________________________________________________________________________________________________________________________ 
 1k23(A) : EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTAT 
         :                                                                                                                          
 1wpm(A) : EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTAT 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________186_______________________________________________________ 
 1k23(A) : ILNK-yKENNVKIEKEIAGL-lSAIISDSLLFKSPTCTDQDVAAAKELAEIAGVDAEEYGLN-lKAGADLSKKTVEELISLDAKEFTLGSKKVEIAQVNTVDIEDVKKRQAELEAVISKV 
         :                                                                                                                          
 1wpm(A) : ILNKMYKENNVKIEKEIAGLMLSAIISDSLLFKSPTCTDQDVAAAKELAEIAGVDAEEYGLNMLKAGADLSKKTVEELISLDAKEFTLGSKKVEIAQVNTVDIEDVKKRQAELEAVISKV 
           ______________________________________________________________186_______________________________________________________ 

           ___________________________________________________________________                                                      
 1k23(A) : VAEKNLDLFLLVITDILENDSLALAIGNEAAKVEKAFNVTLENNTALLKGVVSRKKQVVPVLTDA**                                                      
         :                                                                                                                          
 1wpm(A) : VAEKNLDLFLLVITDILENDSLALAIGNEAAKVEKAFNVTLENNTALLKGVVSRKKQVVPVLTDAMA                                                      
           ___________________________________________________________________                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		84.8
Translation
(A) 		-2.5
Closure
(%) 		94.1
Bending Residues
( green ) 		  186 - 192
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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