DynDom - Protein Domain Motions

Ndp-Rhamnosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Ndp-Rhamnosyltransferase
Conformer 1 (PDB)	3tsa (B)
Conformer 2 (PDB)	3uyk (B)
Window Length	11
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	323	0.19	22 - 29 50 - 379
2	36	0.14	6 - 21 30 - 49

Sequence

`___________________21______29__________________49_______________________________________________________________________` `3tsa(B) : MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGlRFPNPAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGL` `:` `3uyk(B) : MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIR---fPNPAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGL` `___________________21______29__________________49_______________________________________________________________________` `________________________________________________________________________________________________________________________` `3tsa(B) : LDLPVVLHRWGVDPTAGPFSDRAHELLDPVCRHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPYNGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAATELPGVEA` `:` `3uyk(B) : LDLPVVLHRWGVDPTAGPFSDRAHELLDPVCRHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPYNGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAATELPGVEA` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `3tsa(B) : VIAVPPEHRALLTDLPDNARIAESVPLNLFLRTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAM` `:` `3uyk(B) : VIAVPPEHRALLTDLPDNARIAESVPLNLFLRTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAM` `________________________________________________________________________________________________________________________` `____________` `3tsa(B) : PHPAALVRTLEN` `:` `3uyk(B) : PHPAALVRTLEN` `____________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	1.8
Translation (A)	0.0
Closure (%)	87.9
Bending Residues ( green )	21 - 22 29 - 30 49 - 50
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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