Programmed Cell Death Protein 4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Programmed Cell Death Protein 4
  Conformer 1
(PDB) 		3eiq (C)
  Conformer 2
(PDB) 		3eij (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 143 3.47   163 - 325
2 123 0.63   326 - 448

Sequence


           ________________________________________________________________________________________________________________________ 
 3eiq(C) : ******ETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGIL 
         :                                                                                                                          
 3eij(A) : EFLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGIL 
           ________________________________________________________________________________________________________________________ 

           _______________________303______________________________________________________________________________________________ 
 3eiq(C) : CNTYIDSYKdCVQARAALDKATVLLSMvWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 
         :                                                                                                                          
 3eij(A) : CNTYIDSYKdCVQARAALDKATVLLSM--------SKvNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 
           _______________________303______________________________________________________________________________________________ 

           ____________________________________________                                                                             
 3eiq(C) : RIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR                                                                             
         :                                                                                                                          
 3eij(A) : RIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR                                                                             
           ____________________________________________                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		60.9
Translation
(A) 		3.3
Closure
(%) 		99.4
Bending Residues
( green ) 		  303 - 326
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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