Protein (Xylanase)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Xylanase)
  Conformer 1
(PDB) 		1b30 (A)
  Conformer 2
(PDB) 		1jcn (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 56 12.71   93 - 147   164 - 164
2 24 5.2   148 - 163   165 - 172

Sequence


           ________________________________________________________________________________________________________________________ 
 1b30(A) : ASVSIDAKFKAHGKKYLGTIGDQYTLTKNTKNPAIIKADFGQLTPENSMKWDATEPNRGQFTFSGSDYLVNFAQSNGKLIRGHTLVWHSQLPGWVSSITDKNTLISVLKNHITTVMTRYK 
         :                                                                                                                          
 1jcn(B) : **************************************************************TGYVPEDGLTAQQLFASADDLTYNDFLILPGFIDFIADEVDLTSALTRKITLKTPLIS 
           ________________________________________________________________________________________________________________________ 

           ______________________146______________163______________________________________________________________________________ 
 1b30(A) : GKIYAWDVLNEIFNEDGSLRNSVFYNVIGEDYVRIAFETARSVDPNAKLYINDYNLDSAGYSKVNGMVSHVKKWLAAGIPIDGIGSQTHLGAGAGSAVAGALNALASAGTKEIAITELDI 
         :                                                                                                                          
 1jcn(B) : SPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKNFEQGFITDPVVLSPgIPITEvGIVTSRDIDpRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVrTDLKKNRD 
           _______________________92______________109______________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1b30(A) : AGASSTDYVNVVNACLNQAKCVGITVWGVADPDSWRSSSSPLLFDGNYNPKAAYNAIANAL*********************************************************** 
         :                                                                                                                          
 1jcn(B) : YPLASKDSQKQLLCGAAVGTREDDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAE 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________                        
 1b30(A) : *************************************************************************************************                        
         :                                                                                                                          
 1jcn(B) : YARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEkGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFEKRTMSAQI                        
           _________________________________________________________________________________________________                        

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		166.3
Translation
(A) 		-12.1
Closure
(%) 		100.0
Bending Residues
( green ) 		  146 - 148
  163 - 165
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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