Protein (Arrestin)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Arrestin)
  Conformer 1
(PDB) 		1cf1 (C)
  Conformer 2
(PDB) 		4j2q (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 173 2.39   14 - 186   295 - 297   312 - 314   324 - 325
2 159 2.83   187 - 294   298 - 311   315 - 323   326 - 356

Sequence


           ________________________________________________________________________________________________________________________ 
 1cf1(C) : APNHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYL 
         :                                                                                                                          
 4j2q(A) : ***HVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDID-mGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYL 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________186____________________________________________________________ 
 1cf1(C) : PCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTN 
         :                                                                                                                          
 4j2q(A) : PCSVMLQPAPQDVGKSCGVDFEIKAFATH-------kIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTN 
           _________________________________________________________186____________________________________________________________ 

           _____________________________________________294______________311_________323___________________________________________ 
 1cf1(C) : VVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPEDPDdE 
         :                                                                                                                          
 4j2q(A) : VVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLl---TSSEVATEVPFRLMHPQP****** 
           _____________________________________________294______________311_________323___________________________________________ 

           ____________________                                                                                                     
 1cf1(C) : NFVFEEFARQNLKDAGEYKE                                                                                                     
         :                                                                                                                          
 4j2q(A) : ********************                                                                                                     
           ____________________                                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.0
Translation
(A) 		-1.9
Closure
(%) 		64.5
Bending Residues
( green ) 		  186 - 192
  294 - 304
  311 - 315
  323 - 326
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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