P-Selectin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name P-Selectin
  Conformer 1
(PDB) 		1g1s (A)
  Conformer 2
(PDB) 		1g1q (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 117 1.66   3 - 119
2 37 0.5   120 - 156

Sequence


           ___________________________________________________________________________________________________________________118__ 
 1g1s(A) : WTYHYSTKAYSWNISRKYCQNRYTDLVAIQNKNEIDYLNKVLPYYSSYYWIGIRKNNKTWTWVGTKKALTNEAENWADNEPNNKRNNEDCVEIYIKSPSAPGKWNDEHCLKKKHALCYTA 
         :                                                                                                                          
 1g1q(A) : WTYHYSTKAYSWNISRKYCQNRYTDLVAIQNKNEIDYLNKVLPYYSSYYWIGIRKNNKTWTWVGTKKALTNEAENWADNEPNNKRNNEDCVEIYIKSPSAPGKWNDEHCLKKKHALCYTA 
           ___________________________________________________________________________________________________________________118__ 

           ________________________________________                                                                                 
 1g1s(A) : SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRD**                                                                                 
         :                                                                                                                          
 1g1q(A) : SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD                                                                                 
           ________________________________________                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		54.8
Translation
(A) 		0.6
Closure
(%) 		98.8
Bending Residues
( green ) 		  118 - 120
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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