Purine Repressor-Guanine-Purf-Operator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Purine Repressor-Guanine-Purf-Operator
  Conformer 1
(PDB) 		1wet (A)
  Conformer 2
(PDB) 		1dbq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 144 0.48   160 - 293   321 - 336
2 125 1.77   62 - 159   294 - 320

Sequence


           ________________________________________________________________________________________________________________________ 
 1wet(A) : TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVM 
         :                                                                                                                          
 1dbq(A) : *********************************************************KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVM 
           ________________________________________________________________________________________________________________________ 

           _________________________________158____________________________________________________________________________________ 
 1wet(A) : CSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTA 
         :                                                                                                                          
 1dbq(A) : CSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGP------aGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTA 
           _________________________________158____________________________________________________________________________________ 

           ______________________________________________291________________________318_______________________                      
 1wet(A) : VFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYR*                      
         :                                                                                                                          
 1dbq(A) : VFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR                      
           ______________________________________________291________________________318_______________________                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.3
Translation
(A) 		-0.9
Closure
(%) 		71.9
Bending Residues
( green ) 		  158 - 161
  291 - 294
  318 - 322
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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