Spike Glycoprotein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Spike Glycoprotein
  Conformer 1
(PDB)
7lyn (C)
  Conformer 2
(PDB)
7lyn (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 794 2.05   29 - 332   528 - 1145
2 195 1.01   333 - 527

Sequence


           ________________________________________________________________________________________________________________________ 
 7lyn(C) : AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHnPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVn-CTFEYVSfKNLREFV 
         :                                                                                                                          
 7lyn(B) : AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHnPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVnNCTFEYVSfKNLREFV 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________________331__ 
 7lyn(C) : FKNIDGYFKIYSKHTPINLVRGLPQGFSALEPLVDLPIGINITRFQTLLaAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNIT 
         :                                                                                                                          
 7lyn(B) : FKNIDGYFKIYSKHTPINLVRGLPQGFSALEPLVDLPIGINITRFQTLLaAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNIT 
           ___________________________________________________________________________________________________________________331__ 

           ________________________________________________________________________________________________________________________ 
 7lyn(C) : NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLY 
         :                                                                                                                          
 7lyn(B) : NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLY 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________527______________________________________________ 
 7lyn(C) : RLFRKSNLKPFERDISTEIYQAGSTPCNGVKGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTT 
         :                                                                                                                          
 7lyn(B) : RLFRKSNLKPFERDISTEIYQAGSTPCNGVKGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTT 
           _______________________________________________________________________527______________________________________________ 

           ________________________________________________________________________________________________________________________ 
 7lyn(C) : DAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVnVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQT-qSIIAYTMSLGVENSVAYSNNSIAIPTNFTISVTTE 
         :                                                                                                                          
 7lyn(B) : DAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVnVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTsQSIIAYTMSLGVENSVAYSNNSIAIPTNFTISVTTE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 7lyn(C) : ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVT-fNGLTVLPPLLTDEMIA 
         :                                                                                                                          
 7lyn(B) : ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTkFNGLTVLPPLLTDEMIA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 7lyn(C) : QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV 
         :                                                                                                                          
 7lyn(B) : QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 7lyn(C) : QIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYE 
         :                                                                                                                          
 7lyn(B) : QIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYE 
           ________________________________________________________________________________________________________________________ 

           ____________________________________                                                                                     
 7lyn(C) : PQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS                                                                                     
         :                                                                                                                          
 7lyn(B) : PQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS                                                                                     
           ____________________________________                                                                                     

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
64.5
Translation
(A)
5.7
Closure
(%)
27.2
Bending Residues
( green )
  331 - 334
  527 - 531
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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