DynDom - Protein Domain Motions

T-Complex Protein 1 Subunit Delta

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	T-Complex Protein 1 Subunit Delta
Conformer 1 (PDB)	6ks6 (D)
Conformer 2 (PDB)	5gw5 (D)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	266	2.62	142 - 407
2	249	1.7	10 - 141 408 - 524

Sequence

`________________________________________________________________________________________________________________________` `6ks6(D) : PSNATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQ` `:` `5gw5(D) : **NATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQ` `________________________________________________________________________________________________________________________` `_____________141________________________________________________________________________________________________________` `6ks6(D) : SAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPK` `:` `5gw5(D) : SAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPK` `_____________141________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `6ks6(D) : PDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLGSADLVEEIDSDGSKIVRVTG` `:` `5gw5(D) : PDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLGSADLVEEIDSDGSKIVRVTG` `________________________________________________________________________________________________________________________` `_______________________________________407______________________________________________________________________________` `6ks6(D) : IRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVR` `:` `5gw5(D) : IRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVR` `_______________________________________407______________________________________________________________________________` `___________________________________________` `6ks6(D) : RSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFSR` `:` `5gw5(D) : RSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFSR` `___________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	31.1
Translation (A)	1.5
Closure (%)	52.1
Bending Residues ( green )	141 - 142 407 - 408
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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