DynDom - Protein Domain Motions

Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Transcriptional Regulator (Ntrc Family)
Conformer 1 (PDB)	1ny5 (A)
Conformer 2 (PDB)	1ny6 (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	131	0.99	158 - 166 176 - 181 191 - 306
2	108	0.71	144 - 157 167 - 175 182 - 190 307 - 382

Sequence

`________________________________________________________________________________________________________________________` `1ny5(A) : MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK` `:` `1ny6(B) : **********************************************************************************************************************` `________________________________________________________________________________________________________________________` `__________________________________157______166______175___181______190__________________________________________________` `1ny5(A) : LRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI` `:` `1ny6(B) : *******************ESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI` `__________________________________157______166______175___181______190__________________________________________________` `_______________________________________________________________306______________________________________________________` `1ny5(A) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK` `:` `1ny6(B) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK` `_______________________________________________________________306______________________________________________________` `________________________` `1ny5(A) : NVIERAVLFSEGKFIDRGELSCLV` `:` `1ny6(B) : NVIERAVLFSEGKFIDRGELSCLV` `________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	10.1
Translation (A)	0.2
Closure (%)	82.7
Bending Residues ( green )	157 - 158 166 - 167 175 - 176 181 - 182 190 - 191 306 - 307
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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