Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase
  Conformer 1
(PDB) 		2x5o (A)
  Conformer 2
(PDB) 		1e0d (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 289 1.13   3 - 300
2 135 0.46   301 - 435

Sequence


           ________________________________________________________________________________________________________________________ 
 2x5o(A) : ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTT 
         :                                                                                                                          
 1e0d(A) : ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2x5o(A) : LVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAA-lRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHLN 
         :                                                                                                                          
 1e0d(A) : LVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTED------fGLQQYRAAKLRIYENAKVCVVNADDALTMPI--aDERCVSFGVNMGDYHLN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________299_____________________________________________________________ 
 2x5o(A) : HQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLN 
         :                                                                                                                          
 1e0d(A) : HQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLN 
           ________________________________________________________299_____________________________________________________________ 

           _______________________________________________________________________________                                          
 2x5o(A) : GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELGSH                                          
         :                                                                                                                          
 1e0d(A) : GDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG**                                          
           _______________________________________________________________________________                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		47.8
Translation
(A) 		-0.2
Closure
(%) 		99.9
Bending Residues
( green ) 		  299 - 301
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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