Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uridylate Kinase
  Conformer 1
(PDB) 		2j4j (A)
  Conformer 2
(PDB) 		2j4l (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 174 0.51   3 - 136   161 - 205   210 - 213   222 - 224
2 36 1.12   137 - 160   206 - 209   214 - 221

Sequence


           ________________________________________________________________________________________________________________________ 
 2j4j(A) : MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTA 
         :                                                                                                                          
 2j4l(A) : MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTA 
           ________________________________________________________________________________________________________________________ 

           _____________136_____________________160________________________________205_209_213_____221_____                         
 2j4j(A) : AVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEeLLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV                         
         :                                                                                                                          
 2j4l(A) : AVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKI--eLLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV                         
           _____________136_____________________160________________________________205_209_213_____221_____                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.8
Translation
(A) 		-0.3
Closure
(%) 		85.1
Bending Residues
( green ) 		  136 - 137
  160 - 161
  205 - 206
  209 - 210
  213 - 214
  221 - 222
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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