Tropomyosin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tropomyosin
  Conformer 1
(PDB) 		1c1g (B)
  Conformer 2
(PDB) 		1c1g (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 81 1.35   428 - 508
2 93 0.79   313 - 405
3 23 0.95   524 - 546

Sequence


           _________________________________________________________________________________________________________________400____ 
 1c1g(B) : MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 
         :                                                                                                                          
 1c1g(D) : MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 
           _________________________________________________________________________________________________________________968____ 

           ____________________________________________________________________________________________________507_________________ 
 1c1g(B) : DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 
         :                                                                                                                          
 1c1g(D) : DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 
           ___________________________________________________________________________________________________1075_________________ 

           ____________________________________________                                                                             
 1c1g(B) : FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI                                                                             
         :                                                                                                                          
 1c1g(D) : FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI                                                                             
           ____________________________________________                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.9
Translation
(A) 		6.9
Closure
(%) 		91.3
Bending Residues
( green ) 		  400 - 428
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		16.9
Translation
(A) 		8.3
Closure
(%) 		92.4
Bending Residues
( green ) 		  507 - 525
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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