Proaerolysin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Proaerolysin
  Conformer 1
(PDB) 		1pre (B)
  Conformer 2
(PDB) 		1z52 (B)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 290 0.78   81 - 202   226 - 273   292 - 411
2 74 0.35   7 - 80
3 75 0.75   203 - 225   274 - 291   412 - 462

Sequence


           ______________________________________________________________________________80________________________________________ 
 1pre(B) : *EPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLA 
         :                                                                                                                          
 1z52(B) : AEPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLA 
           ______________________________________________________________________________80________________________________________ 

           _______________________________________________________________________________202__________________223_________________ 
 1pre(B) : HYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRYDTATNWSKTNTYGLSEKVT 
         :                                                                                                                          
 1z52(B) : HYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRYDTATNWSKTNTYGLSEKVT 
           _______________________________________________________________________________202__________________223_________________ 

           ______________________________273_______________291_____________________________________________________________________ 
 1pre(B) : TKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWD 
         :                                                                                                                          
 1z52(B) : TKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWD 
           ______________________________273_______________291_____________________________________________________________________ 

           ______________________________________________409___________________________________________                             
 1pre(B) : KRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIGAPVPLAAlRLEIPLDAQELSGLGFNNVSLSVTPAA                             
         :                                                                                                                          
 1z52(B) : KRYIPGEVKWWDLNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIGAPVPLA-lRLEIPLDAQELSGLGFNNVSLSVTPA*                             
           ______________________________________________409___________________________________________                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.7
Translation
(A) 		-0.3
Closure
(%) 		48.0
Bending Residues
( green ) 		  80 - 81
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		6.1
Translation
(A) 		-0.3
Closure
(%) 		86.8
Bending Residues
( green ) 		  202 - 203
  223 - 226
  273 - 277
  291 - 298
  409 - 412
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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