Small-Conductance Mechanosensitive Channel

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Small-Conductance Mechanosensitive Channel
  Conformer 1
(PDB) 		2oau (C)
  Conformer 2
(PDB) 		2oau (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 20 0.14   91 - 110
2 62 0.17   29 - 90
3 168 0.38   111 - 278

Sequence


           ________________________________________________________84_______________________110____________________________________ 
 2oau(C) : YAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVL 
         :                                                                                                                          
 2oau(D) : YAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVL 
           ________________________________________________________84_______________________110____________________________________ 

           ________________________________________________________________________________________________________________________ 
 2oau(C) : SVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGI 
         :                                                                                                                          
 2oau(D) : SVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGI 
           ________________________________________________________________________________________________________________________ 

           ______________                                                                                                           
 2oau(C) : SFPYPQMDVNFKRV                                                                                                           
         :                                                                                                                          
 2oau(D) : SFPYPQMDVNFKRV                                                                                                           
           ______________                                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.4
Translation
(A) 		0.1
Closure
(%) 		46.5
Bending Residues
( green ) 		  84 - 92
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		6.9
Translation
(A) 		0.7
Closure
(%) 		91.2
Bending Residues
( green ) 		  110 - 114
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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