Pumilio 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Pumilio 1
  Conformer 1
(PDB) 		1m8y (A)
  Conformer 2
(PDB) 		1m8z (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 168 0.55   956 - 957   964 - 978   986 - 1129   1142 - 1148
2 138 0.6   831 - 955   958 - 963   979 - 985
3 27 0.75   1130 - 1141   1149 - 1163

Sequence


           ________________________________________________________________________________________________________________________ 
 1m8y(A) : GRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPS 
         :                                                                                                                          
 1m8z(A) : GRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPS 
           ________________________________________________________________________________________________________________________ 

           _____955_____963____________978____985__________________________________________________________________________________ 
 1m8y(A) : DQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG 
         :                                                                                                                          
 1m8z(A) : DQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG 
           _____955_____963____________978____985__________________________________________________________________________________ 

           __________________________________________________________1129________1141___1148____________________                    
 1m8y(A) : NVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY                    
         :                                                                                                                          
 1m8z(A) : NVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK**                    
           __________________________________________________________1129________1141___1148____________________                    

Morph
Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.6
Translation
(A) 		0.5
Closure
(%) 		61.5
Bending Residues
( green ) 		  955 - 958
  963 - 969
  978 - 979
  985 - 986
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		10.3
Translation
(A) 		-0.1
Closure
(%) 		20.8
Bending Residues
( green ) 		  1129 - 1130
  1141 - 1144
  1148 - 1150
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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