Cmp-N-Acetylneuraminate-Beta-Galactosamide-Alpha-2,3- Sialyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cmp-N-Acetylneuraminate-Beta-Galactosamide-Alpha-2,3- Sialyltransferase
  Conformer 1
(PDB) 		2yk5 (A)
  Conformer 2
(PDB) 		2yk7 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 102 0.36   133 - 232   350 - 355
2 77 0.65   51 - 132
3 116 0.96   233 - 349   363 - 363

Sequence


           _________________________________________________________________________________132____________________________________ 
 2yk5(A) : PVNLIFCYTILQ-kVAERI-aQHPGERFYVVL-sENRNEKYDYYFNQIKDKAEWAYFFHLPYGLNKSFNFIPT-aELKVKA-lLPKVKRIYLASLEKVSIAAFLSTYPDAEIKTFDDGTI 
         :                                                                                                                          
 2yk7(A) : PVNLIFCYTILQMKVAERIMAQHPGERFYVVLMSENNNEKYDYYFNQIKDKAEWAYFFHLPYGLNKSFNFIPTMAELKVKAMLLPKVKRIYLASLEKVSIAAFLSTYPDAEIKTFDDGTI 
           _________________________________________________________________________________132____________________________________ 

           _____________________________________________________________232________________________________________________________ 
 2yk5(A) : NLIQSSSYLGDEFSVNGTIKRNFAR--iGDWSIAKTRNASDEHYTIFKGLKNI-dDGRRK-tYLPLFDASELKAGDETGGTVRILLGSPDKE-kEISEKAAKNFNIQYVAPHPRQTYGLS 
         :                                                                                                                          
 2yk7(A) : NLIQSSSYLGDEFSVNGTIKRNFARMMIGDWSIAKTRNASDEHYTIFKGLKNIMDDGRRKMTYLPLFDASELKAGDETGGTVRILLGSPDKEMKEISEKAAKNFNIQYVAPHPRQTYGLS 
           _____________________________________________________________232________________________________________________________ 

           __________________________________________________________349___355___________________                                   
 2yk5(A) : GVTTLNSPYVIEDYILREIKKNPHTRYEIYTFFSGAALT-kDFPNVHVYALKPASLPEDYWLKPVYALFTQSGIPILTFDDKLVPR                                   
         :                                                                                                                          
 2yk7(A) : GVTTLNSPYVIEDYILREIKKNPHTRYEIYTFFSGAALTMKDFPNVHVYALKPASLPEDYWLKPVYALFTQSGIPILTFDDK****                                   
           __________________________________________________________349___355___________________                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.0
Translation
(A) 		0.3
Closure
(%) 		95.0
Bending Residues
( green ) 		  132 - 133
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		11.6
Translation
(A) 		0.1
Closure
(%) 		99.1
Bending Residues
( green ) 		  232 - 240
  349 - 350
  355 - 363
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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