Extracellular Ligand-Binding Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Extracellular Ligand-Binding Receptor
  Conformer 1
(PDB) 		4mlc (A)
  Conformer 2
(PDB) 		4q6b (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 174 0.51   8 - 24   29 - 122   254 - 255   264 - 269   271 - 271   285 - 317   319 - 319   321 - 338   341 - 344   348 - 349
2 150 0.65   25 - 28   123 - 253   256 - 263   270 - 270   272 - 284   318 - 318   320 - 320   339 - 340   345 - 347

Sequence


           _________________24__28__________________________________________________________________________________________122____ 
 4mlc(A) : EEIFIGVAWPFASLDDLFAEGLELAVQEINEQGGVQGRKLSLVKADDEAELEKGLAIAQAFADNAGIQAVIGHRNSFISIPAASIYDQAGLVlSPASTSPDLTDHGYIHVFRNIPSDQEI 
         :                                                                                                                          
 4q6b(A) : EEIFIGVAWPFASLDDLFAEGLELAVQEINEQGGVQGRKLSLVKADDEAELEKGLAIAQAFADNAGIQAVIGHRNSFISIPAASIYDQAGLVlSPASTSPDLTDHGYIHVFRNIPSDQEI 
           _________________24__28__________________________________________________________________________________________122____ 

           _______________________________________________________________________________________________________________253______ 
 4mlc(A) : ARQLAIYLAEQGHERvIYYTDDSYGNGLANAFEDYARAQGITIVDRFNYYGNLKDLERLYDKWQAFGdGIFIAKTATGGGTEFLVDAKSVGIEVPLIAGNSWDAgtAEGLLVGSFFNPQR 
         :                                                                                                                          
 4q6b(A) : ARQLAIYLAEQGHERvIYYTDDSYGNGLANAFEDYARAQGITIVDRFNYYGNLKDLERLYDKWQAFGdGIFIAKTATGGGTEFLVDAKSVGIEVPLIAGNSWDA-tAEGLLVGSFFNPQR 
           _______________________________________________________________________________________________________________253______ 

           _263___269____________284__________________________313____________________338__344_______                                
 4mlc(A) : PDSRTQDFVEAFRREYGQPPTSYAAAGYDAVILLAEALEKSDLTHPATLAQGLRDLGPWEGVghRFDGRGDDIGDLVVLKKkDGRFEYL                                
         :                                                                                                                          
 4q6b(A) : PDSRTQDFVEAFRREYGQPPTSYAAAGYDAVILLAEALEKSDLTHPATLAQGLRDLGPWEGVghRFDGRGDDIGDLVVLKKkDGRFEYL                                
           _263___269____________284__________________________313____________________338__344_______                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.1
Translation
(A) 		0.0
Closure
(%) 		82.5
Bending Residues
( green ) 		  24 - 25
  28 - 29
  122 - 123
  253 - 256
  263 - 264
  269 - 272
  284 - 285
  313 - 321
  338 - 341
  344 - 345
  347 - 348
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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