Free Fatty Acid Receptor 1,Lysozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Free Fatty Acid Receptor 1,Lysozyme
  Conformer 1
(PDB) 		4phu (A)
  Conformer 2
(PDB) 		5kw2 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 235 1.94   5 - 901   2216 - 2276
2 164 0.95   1002 - 2215

Sequence


           ________________________________________________________________________________________________________________________ 
 4phu(A) : MDLPPQLSFGLYVAAFALGFPLNVLAIRGATAHARLRLTPSAVYALNLGCSDLLLTVSLPLKAVEALASGAWPLPASLCPVFAVAHFAPLYAGGGFLAALSAARYLGAAFP--------p 
         :                                                                                                                          
 5kw2(A) : **LPPQLSFGLYVAAFALGFPLNVLAIRGATA------tPSAVYALNLGCSDLLLTVSLPLKAVEALASGAWPLPASLCPVFAVAHFAPLYAGGGFLAALSAARYLGAAFPLGYQAFRRP 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________900____________________________ 
 4phu(A) : CYSWGVCAAIWALVLCHLGLVFGLEAPGGWLDHSNTSLGINTPVNGSPVCLEAWDPASAGPARFSLSLLLFFLPLAITAFCFVGCLRALARGSNIFEMLRIDEGLRLKIYKDTEGYYTIG 
         :                                                                                                                          
 5kw2(A) : CYSWGVCAAIWALVLCHLGLVFGLEAp---------------------VCLEAWDPASAGPARFSLSLLLFFLPLAITAFCFVGCLRALARGSNIFEMLRIDEGLRLKIYKDTEGYYTIG 
           _________________________________________________________________________________________901____________________________ 

           ________________________________________________________________________________________________________________________ 
 4phu(A) : IGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKR 
         :                                                                                                                          
 5kw2(A) : IGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKR 
           ________________________________________________________________________________________________________________________ 

           __________1902____________________________________________________________________                                       
 4phu(A) : VITTFRTGTWDAYGSLTHRRKLRAAWVAGGALLTLLLCVGPYNASNVASFLYPNLGGSWRKLGLITGAWSVVLNPLVTGYLG                                       
         :                                                                                                                          
 5kw2(A) : VITTFRTGTWDAYGSLTHRRKLRAAWVAGGALLTLLLCVGPYNASNVASFLYPNLGGSWRKLGLITGAWSVVLNPLVTGY**                                       
           __________1903____________________________________________________________________                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		62.1
Translation
(A) 		-0.5
Closure
(%) 		60.8
Bending Residues
( green ) 		  900 - 1002
  1902 - 2216
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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