Fusion Protein Beta-2 Adrenergic Receptor/lysozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fusion Protein Beta-2 Adrenergic Receptor/lysozyme
  Conformer 1
(PDB) 		3pds (A)
  Conformer 2
(PDB) 		3ny8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 90 0.55   1006 - 1012   1078 - 1160
2 272 0.74   42 - 1005   1161 - 340
3 65 0.61   1013 - 1077

Sequence


           ________________________________________________________________________________________________________________________ 
 3pds(A) : DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKN 
         :                                                                                                                          
 3ny8(A) : ***WVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKN 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________1005__________________________________ 
 3pds(A) : KARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSL 
         :                                                                                                                          
 3ny8(A) : KARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSL 
           __________________________________________________________________________________1005__________________________________ 

           ______________________________1073__________________________________________________________________________________1159 
 3pds(A) : NAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWD 
         :                                                                                                                          
 3ny8(A) : NAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWD 
           ______________________________1073__________________________________________________________________________________1159 

           __________________________________________________________________________________                                       
 3pds(A) : AYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRSPDFRIAFQELLCL                                       
         :                                                                                                                          
 3ny8(A) : AYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRSPDFRIAFQELLCL                                       
           __________________________________________________________________________________                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.3
Translation
(A) 		0.8
Closure
(%) 		90.5
Bending Residues
( green ) 		  1005 - 1012
  1159 - 263
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		22.3
Translation
(A) 		-1.7
Closure
(%) 		63.4
Bending Residues
( green ) 		  1006 - 1013
  1073 - 1079
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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