Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Subunit 2
  Conformer 1
(PDB) 		1fto (A)
  Conformer 2
(PDB) 		1mm6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 142 0.54   7 - 109   219 - 257
2 111 0.56   110 - 218   258 - 259

Sequence


           _________________________________________________________________________________________________________109____________ 
 1fto(A) : ***TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPI 
         :                                                                                                                          
 1mm6(A) : ANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPI 
           _________________________________________________________________________________________________________109____________ 

           ____________________________________________________________________________________________216_________________________ 
 1fto(A) : ESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKL 
         :                                                                                                                          
 1mm6(A) : ESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKL 
           ____________________________________________________________________________________________216_________________________ 

           ____________256______                                                                                                    
 1fto(A) : NEQGLLDKLKNKWWYDKGEC*                                                                                                    
         :                                                                                                                          
 1mm6(A) : NEQGLLDKLKNKWWYDKGECG                                                                                                    
           ____________256______                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.4
Translation
(A) 		-0.4
Closure
(%) 		97.7
Bending Residues
( green ) 		  109 - 110
  216 - 219
  256 - 259
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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