Glutamate Receptor 4,Glutamate Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 4,Glutamate Receptor
  Conformer 1
(PDB) 		3fas (A)
  Conformer 2
(PDB) 		3fat (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 139 0.3   6 - 106   139 - 144   218 - 249
2 110 0.48   107 - 138   145 - 217   250 - 254

Sequence


           ______________________________________________________________________________________________________105_______________ 
 3fas(A) : GRTVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIE 
         :                                                                                                                          
 3fat(A) : GRTVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIE 
           ______________________________________________________________________________________________________105_______________ 

           _______________138___144______________________________________________________________________217_____________________24 
 3fas(A) : SAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLS 
         :                                                                                                                          
 3fat(A) : SAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLS 
           _______________138___144______________________________________________________________________217_____________________24 

           1___________________                                                                                                     
 3fas(A) : EAGVLDKLKNKWWYDKGECG                                                                                                     
         :                                                                                                                          
 3fat(A) : EAGVLDKLKNKWWYDKGEC*                                                                                                     
           1___________________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.9
Translation
(A) 		0.2
Closure
(%) 		73.4
Bending Residues
( green ) 		  105 - 107
  138 - 139
  144 - 145
  217 - 218
  241 - 254
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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