Glyceraldehyde-3-Phosphate Dehydrogenase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glyceraldehyde-3-Phosphate Dehydrogenase 1
  Conformer 1
(PDB) 		3lc7 (Q)
  Conformer 2
(PDB) 		3lc2 (P)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 283 0.9   4 - 175   210 - 231   241 - 241   243 - 331
2 44 0.27   176 - 209   232 - 240   242 - 242

Sequence


           ________________________________________________________________________________________________________________________ 
 3lc7(Q) : HSGMAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKV 
         :                                                                                                                          
 3lc2(P) : ***MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKV 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________175______________________________208____________________231______ 
 3lc7(Q) : LISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPV 
         :                                                                                                                          
 3lc2(P) : LISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPV 
           _______________________________________________________175______________________________208____________________231______ 

           240______________________________________________________________________________________________                        
 3lc7(Q) : ATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVG-rQLVKVAAWYDNEMSYTAQLVRTLAYLAEL                        
         :                                                                                                                          
 3lc2(P) : ATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAEL                        
           240______________________________________________________________________________________________                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.6
Translation
(A) 		0.3
Closure
(%) 		71.1
Bending Residues
( green ) 		  175 - 177
  208 - 219
  231 - 234
  240 - 243
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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