Malyl-Coa Lyase/beta-Methylmalyl-Coa Lyase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Malyl-Coa Lyase/beta-Methylmalyl-Coa Lyase
  Conformer 1
(PDB) 		4roq (A)
  Conformer 2
(PDB) 		4l9z (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 251 1.04   12 - 268
2 50 1.68   269 - 318

Sequence


           ________________________________________________________________________________________________________________________ 
 4roq(A) : SFTLIQQATP-RLHRSELAVPGSNPTFMEKSAASKADVIFLDLEDAVAPDDKEQARKNIIQALNDLDWGNKTMMIRINGLDTHYMYRDVVDIVE-ACPRLDMILIPKVGVPADVYAIDVL 
         :                                                                                                                          
 4l9z(A) : **FRLQPAPPARPNRCQLFGPGSRPALFEKMAASAADVINLDLEDSVAPDDKAQARANIIEAINGLDWGRKYLSVRINGLDTPFWYRDVVDLLEQAGDRLDQIMIPKVGCAADVYAVDAL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4roq(A) : TTQIEQAKKREKKIGFEVLIETALGMANVEAIATSSKRLEAMSFGVADYAASTRARSTVIGGVNADYSVLTDKDEAGNRQTHWQDPWLFAQNRMLVACRAYGLRPIDGPFGDFSDPDGYT 
         :                                                                                                                          
 4l9z(A) : VTAIERAKGRTKPLSFEVIIESAAGIAHVEEIAASSPRLQAMSLGAADFAASMGMQTTGIGGTQENYYMLHD----G--QKHWSDPWHWAQAAIVAACRTHGILPVDGPFGDFSDDEGFR 
           ________________________________________________________________________________________________________________________ 

           __________________________268_______________________________________________________                                     
 4roq(A) : SAARRCAALGFEGKWAIHPSQIDLANEVFTPSEAEVTKARRILEAMEEAAKAGRGAVSLDGRLIDIASIRMAEALIQKADAMGG                                     
         :                                                                                                                          
 4l9z(A) : AQARRSATLGMVGKWAIHPKQVALANEVFTPSETAVTEAREILAAMDAAKARGEGATVYKGRLVDIASIKQAEVIVRQAEM***                                     
           __________________________263_______________________________________________________                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		32.3
Translation
(A) 		-0.9
Closure
(%) 		76.8
Bending Residues
( green ) 		  268 - 269
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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