N-Methyl-D-Aspartate Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name N-Methyl-D-Aspartate Receptor Subunit 1
  Conformer 1
(PDB) 		1pb7 (A)
  Conformer 2
(PDB) 		1y1m (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 167 0.72   7 - 146   240 - 283
2 93 0.54   147 - 239

Sequence


           ________________________________________________________________________________________________________________________ 
 1pb7(A) : TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNhTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNER 
         :                                                                                                                          
 1y1m(B) : *RLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGP--tVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQE-------kEWNGMMGELLSGQADMIVAPLTINNER 
           ________________________________________________________________________________________________________________________ 

           ___________145___________________________________________________________________________________________239____________ 
 1pb7(A) : AQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG 
         :                                                                                                                          
 1y1m(B) : AQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG 
           ___________145___________________________________________________________________________________________239____________ 

           _________________________________________                                                                                
 1pb7(A) : IGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS                                                                                
         :                                                                                                                          
 1y1m(B) : IGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWV*******                                                                                
           _________________________________________                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.8
Translation
(A) 		-0.1
Closure
(%) 		98.4
Bending Residues
( green ) 		  145 - 147
  239 - 246
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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