Octopine-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Octopine-Binding Periplasmic Protein
  Conformer 1
(PDB) 		5ore (A)
  Conformer 2
(PDB) 		5org (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 129 0.88   23 - 108   232 - 274
2 123 0.8   109 - 231

Sequence


           ____________________________________________________________________________________106_________________________________ 
 5ore(A) : *QEKSITIATEGGYAPWNFSGPGGKLDGFEIDLANALCEKMKAKCQIVAQNWDGIMPSLTGKKYDAIMAAMSVTPKRQEVIGFSIPYAAGINGFAVMGDSKLAEMPGLGETYSLDSQADA 
         :                                                                                                                          
 5org(A) : MQEKSITIATEGGYAPWNFSGPGGKLDGFEIDLANALCEKMKAKCQIVAQNWDGIMPSLTGKKYDAIMAAMSVTPKRQEVIGFSIPYAAGINGFAVMGDSKLAEMPGLGETYSLDSQADA 
           ____________________________________________________________________________________106_________________________________ 

           _________________________________________________________________________________________231____________________________ 
 5ore(A) : AKKAIADISSFLNGTTVGVQGSTTASTFLDKYFKGSVDIKEYKSVEEHNLDLTSGRLDAVLANATVLAAAIEKPEMKGAKLVGPLFSGGEFGVVAVGLRKEDTALKADFDAAIKAASEDG 
         :                                                                                                                          
 5org(A) : AKKAIADISSFLNGTTVGVQGSTTASTFLDKYFKGSVDIKEYKSVEEHNLDLTSGRLDAVLANATVLAAAIEKPEMKGAKLVGPLFSGGEFGVVAVGLRKEDTALKADFDAAIKAASEDG 
           _________________________________________________________________________________________231____________________________ 

           ______________________                                                                                                   
 5ore(A) : TIKTLSLKWFKVDVTPQHHHHH                                                                                                   
         :                                                                                                                          
 5org(A) : TIKTLSLKWFKVDVTPQ*****                                                                                                   
           ______________________                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		43.3
Translation
(A) 		-0.1
Closure
(%) 		99.5
Bending Residues
( green ) 		  106 - 110
  231 - 232
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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