Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglycerate Kinase
  Conformer 1
(PDB) 		3pgk (A)
  Conformer 2
(PDB) 		1vpe (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 201 3.41   194 - 387   394 - 401
2 188 4.07   7 - 193   388 - 393   402 - 411

Sequence


           ________________________________________________________________________________________________________________________ 
 3pgk(A) : SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENL 
         :                                                                                                                          
 1vpe(A) : ***EKMTIRDVDLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAK-VILLSHLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENT 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________193______________________________________________ 
 3pgk(A) : RYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGF-DLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAF 
         :                                                                                                                          
 1vpe(A) : RFH---PGETKND--------PELAKF---WASLADIHVNDAFGTAHRAHASNVGIAQFIPSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMF 
           _______________________________________________________________________177______________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3pgk(A) : TFKKVLENTEIGDSIFDKAVGPEIAKLMEKAKAKGVEVVLPVDFIIADAFSASANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKATVILWNGPPGVFEFEKFAAGTKALLDEVVKS 
         :                                                                                                                          
 1vpe(A) : TFLKAL-GKEVGSSRVEEDKIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAAL 
           ________________________________________________________________________________________________________________________ 

           _________________________387___393_____401_______________                                                                
 3pgk(A) : SAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEKK*                                                                
         :                                                                                                                          
 1vpe(A) : TEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIKKA                                                                
           _________________________370___376_____384_______________                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		34.3
Translation
(A) 		-1.3
Closure
(%) 		82.2
Bending Residues
( green ) 		  193 - 194
  387 - 388
  393 - 394
  401 - 402
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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