Phosphoglycerate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglycerate Dehydrogenase
  Conformer 1
(PDB) 		1wwk (A)
  Conformer 2
(PDB) 		2ekl (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 207 1.98   92 - 297   299 - 302
2 90 1.21   3 - 91   298 - 298

Sequence


           _____________________________________________________________________________________________91_________________________ 
 1wwk(A) : ****MKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIA 
         :                                                                                                                          
 2ekl(A) : AIYTVKALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMY 
           _____________________________________________________________________________________________96_________________________ 

           ________________________________________________________________________________________________________________________ 
 1wwk(A) : FADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDT 
         :                                                                                                                          
 2ekl(A) : TSMALAKSGIFKKIE--GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________297___________                                              
 1wwk(A) : NALVKALKEGWIAGAGLDVFEEEPLPKDH---PLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG****                                              
         :                                                                                                                          
 2ekl(A) : KALLDYIKKGKVYAYATDVFWNEP-PKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGMI                                              
           _____________________________________________________________302___________                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.5
Translation
(A) 		0.6
Closure
(%) 		80.0
Bending Residues
( green ) 		  91 - 92
  297 - 299
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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