Phosphoglycerate Kinase, Testis Specific

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglycerate Kinase, Testis Specific
  Conformer 1
(PDB) 		2paa (A)
  Conformer 2
(PDB) 		2x15 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 211 1.36   6 - 199   222 - 223   393 - 414
2 191 1.14   200 - 221   224 - 392

Sequence


           ________________________________________________________________________________________________________________________ 
 2paa(A) : **AKLTLDKVDLKGKRVIMRVDFNVPMKNNQITNNQRIKAAIPSIKHCLDNGAKSVVLMSHLGRPDGIPMPDKYSLEPVADELKSLLNKDVIFLKDCVGPEVEQACANPDNGSIILLENL 
         :                                                                                                                          
 2x15(A) : LSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENL 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________190___________________212_____________________________ 
 2paa(A) : RFHVEEEGKGKDSSGKKISADPAKVEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKASGFLMKKELDYFSKALEKPERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAY 
         :                                                                                                                          
 2x15(A) : RFHVEEEGKGK-------kAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAF 
           __________________________________________________________________191___________________213_____________________________ 

           ________________________________________________________________________________________________________________________ 
 2paa(A) : TFLKELKNMQIGASLFDEEGATIVKEIMEKAEKNGVKIVFPVDFVTGDKFDENAKVGQATIESGIPSGWMGLDCGPESIKINAQIVAQAKLIVWNGPIGVFEWDAFAKGTKALMDEVVKA 
         :                                                                                                                          
 2x15(A) : TFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKA 
           ________________________________________________________________________________________________________________________ 

           ____________________________392________________________                                                                  
 2paa(A) : TSNGCVTIIGGGDTATCCAKWGTEDKVSHVSTGGGASLELLEGKILPGVEALSNM                                                                  
         :                                                                                                                          
 2x15(A) : TSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNI                                                                  
           ____________________________393________________________                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		31.9
Translation
(A) 		-2.7
Closure
(%) 		99.6
Bending Residues
( green ) 		  190 - 201
  212 - 224
  392 - 394
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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