Phosphoglucosamine Mutase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglucosamine Mutase
  Conformer 1
(PDB) 		6gyz (A)
  Conformer 2
(PDB) 		6gyz (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 379 0.67   5 - 375   403 - 407   423 - 424   426 - 428
2 62 0.85   376 - 402   408 - 422   425 - 425   429 - 447

Sequence


           ________________________________________________________________________________________________________________________ 
 6gyz(A) : KYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDE 
         :                                                                                                                          
 6gyz(B) : KYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6gyz(A) : QENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIALDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGD 
         :                                                                                                                          
 6gyz(B) : QENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIALDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6gyz(A) : GDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSEL 
         :                                                                                                                          
 6gyz(B) : GDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSEL 
           ________________________________________________________________________________________________________________________ 

           ________375________________________402_________________422_____________________________                                  
 6gyz(A) : AGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK                                  
         :                                                                                                                          
 6gyz(B) : AGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLD*                                  
           ________375________________________402_________________422_____________________________                                  

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.8
Translation
(A) 		-0.7
Closure
(%) 		59.4
Bending Residues
( green ) 		  375 - 376
  402 - 408
  422 - 430
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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