Plasmid Segregation Protein Parm

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Plasmid Segregation Protein Parm
  Conformer 1
(PDB) 		4a61 (A)
  Conformer 2
(PDB) 		4a62 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 169 1.4   8 - 11   103 - 112   146 - 149   153 - 311   315 - 318
2 135 0.94   3 - 7   12 - 102   113 - 145   150 - 152   312 - 314

Sequence


           _______7__11________________________________________________________________________________________102____109__________ 
 4a61(A) : HHLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENI 
         :                                                                                                                          
 4a62(A) : *MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENI 
           _______7__11________________________________________________________________________________________102____109__________ 

           _______________________145_149__________________________________________________________________________________________ 
 4a61(A) : ERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDERDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALs-------SYLADDIIIHRKDNNYLKQRI 
         :                                                                                                                          
 4a62(A) : ERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDEADSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRI 
           _______________________145_149__________________________________________________________________________________________ 

           _____________________________________________________________________311_________                                        
 4a61(A) : N-----sIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN                                        
         :                                                                                                                          
 4a62(A) : NDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN                                        
           _____________________________________________________________________311_________                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.8
Translation
(A) 		-0.2
Closure
(%) 		34.5
Bending Residues
( green ) 		  7 - 8
  11 - 12
  102 - 103
  109 - 115
  145 - 146
  149 - 150
  152 - 153
  311 - 312
  314 - 315
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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