Putative Sugar-Binding Lipoprotein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Sugar-Binding Lipoprotein
  Conformer 1
(PDB) 		3vxb (A)
  Conformer 2
(PDB) 		3vxc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 222 0.43   156 - 324   381 - 433
2 172 0.61   40 - 155   325 - 380

Sequence


           ___________________________________________________________________________________________________________________155__ 
 3vxb(A) : TITAMVYGDDAVKVQDKAASRFNASAEAKKANAKVKMERIPASDYPAKLRTAMGSPNAPDIFFNWGGGSIKAYKEAGQLVDLTDVIKSDEVLSTGFLPSVVAAGSLDGHEYGIPMRGMQP 
         :                                                                                                                          
 3vxc(A) : TITAMVYGDDAVKVQDKAASRFNASAEAKKANAKVKMERIPASDYPAKLRTAMGSPNAPDIFFNWGGGSIKAYKEAGQLVDLTDVIKSDEVLSTGFLPSVVAAGSLDGHEYGIPMRGMQP 
           ___________________________________________________________________________________________________________________155__ 

           ________________________________________________________________________________________________________________________ 
 3vxb(A) : VLLFYNKSVFAEHKLTPPTTWDQLLDNVAKLKKAGVTPFALGGVEIWPELMWLEYLVDRIGGPQVFDKIRNGDASGWGDPAVLKAAQTVKQLVDEGAFGKGFSSVSYNNGGAPALLAKGK 
         :                                                                                                                          
 3vxc(A) : VLLFYNKSVFAEHKLTPPTTWDQLLDNVAKLKKAGVTPFALGGVEIWPELMWLEYLVDRIGGPQVFDKIRNGDASGWGDPAVLKAAQTVKQLVDEGAFGKGFSSVSYNNGGAPALLAKGK 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________323______________________________________________________380_________________ 
 3vxb(A) : AGMHLMGSWEYSTQLGKFPDFAKKDLGWCAFPSFEGGAGDIRNVVGNPCNYWSVNARTGNKDGAIAFLRDCASEAYTKDLIDNGDVPTTTIAENMLDSSPNPEFAKFQYQLVQKAPNFTL 
         :                                                                                                                          
 3vxc(A) : AGMHLMGSWEYSTQLGKFPDFAKKDLGWCAFPSFEGGAGDIRNVVGNPCNYWSVNARTGNKDGAIAFLRDCASEAYTKDLIDNGDVPTTTIAENMLDSSPNPEFAKFQYQLVQKAPNFTL 
           ___________________________________________323______________________________________________________380_________________ 

           _______________________________________                                                                                  
 3vxb(A) : SWDQAVDPDWQQPMLTEINKLFVGKSSPEQFVSALKGLK                                                                                  
         :                                                                                                                          
 3vxc(A) : SWDQAVDPDWQQPMLTEINKLFVGKSSPEQFVSALKGL*                                                                                  
           _______________________________________                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		33.9
Translation
(A) 		0.8
Closure
(%) 		99.6
Bending Residues
( green ) 		  155 - 157
  323 - 325
  380 - 390
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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