Skp2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Skp2
  Conformer 1
(PDB) 		1fqv (A)
  Conformer 2
(PDB) 		1fs2 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 207 2.4   193 - 399
2 46 2.94   109 - 192

Sequence


           ____________________________________________151_________________________________________________________________________ 
 1fqv(A) : **VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 
         :                                                                                                                          
 1fs2(A) : PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD--------------------------------------EFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 
           ____________________________________________151_________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1fqv(A) : LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 
         :                                                                                                                          
 1fs2(A) : LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________                                  
 1fqv(A) : QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTLQ                                  
         :                                                                                                                          
 1fs2(A) : QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQIN******************************                                  
           _______________________________________________________________________________________                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		61.6
Translation
(A) 		-9.6
Closure
(%) 		85.6
Bending Residues
( green ) 		  151 - 205
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download