Spike Glycoprotein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Spike Glycoprotein
  Conformer 1
(PDB) 		2cmz (A)
  Conformer 2
(PDB) 		2cmz (B)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 260 0.75   6 - 45   177 - 253   261 - 403
2 139 0.49   46 - 176   254 - 260   404 - 404

Sequence


           ___________________________________________45___________________________________________________________________________ 
 2cmz(A) : KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTAIQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITQSIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVT 
         :                                                                                                                          
 2cmz(B) : KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTAIQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITQSIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVT 
           ___________________________________________45___________________________________________________________________________ 

           _________________________________________________172____________________________________________________________________ 
 2cmz(A) : DAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPTVHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMA 
         :                                                                                                                          
 2cmz(B) : DAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPTVHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMA 
           _________________________________________________172____________________________________________________________________ 

           __________253____260____________________________________________________________________________________________________ 
 2cmz(A) : DKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIINGTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDW 
         :                                                                                                                          
 2cmz(B) : DKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIINGTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDW 
           __________253____260____________________________________________________________________________________________________ 

           ________________________________________403_______                                                                       
 2cmz(A) : APYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSSKAQVFEHPH*                                                                       
         :                                                                                                                          
 2cmz(B) : APYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSSKAQVFEHPHI                                                                       
           ________________________________________403_______                                                                       

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.7
Translation
(A) 		0.2
Closure
(%) 		97.4
Bending Residues
( green ) 		  45 - 49
  172 - 177
  253 - 254
  260 - 261
  403 - 404
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download