DynDom - Protein Domain Motions

Succinyl-Coa Synthetase, Beta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Succinyl-Coa Synthetase, Beta Chain
Conformer 1 (PDB)	1euc (B)
Conformer 2 (PDB)	5cae (B)
Window Length	9
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	342	0.64	5 - 324 345 - 353 376 - 389
2	41	1.27	325 - 344 354 - 375

Sequence

`________________________________________________________________________________________________________________________` `1euc(B) : MVNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAI` `:` `5cae(B) : *MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAI` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1euc(B) : LMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAM` `:` `5cae(B) : LMDRS-nGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAM` `________________________________________________________________________________________________________________________` `_________________________________________________________________________________323__________________344______353______` `1euc(B) : DDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVN-aIIANGITKACRELELKVPLVVRLEGT` `:` `5cae(B) : DDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT` `_________________________________________________________________________________323__________________344______353______` `_____________375__________________` `1euc(B) : NVHEAQNILTNSGLPITSAVDLEDAAKKAVASVT` `:` `5cae(B) : NVHEAQNILTNSGLPITSAVDLEDAAKKAVASVT` `_____________375__________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.

play backwards

pause

play forwards

Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	12.7
Translation (A)	-0.1
Closure (%)	92.4
Bending Residues ( green )	323 - 325 344 - 348 353 - 354 375 - 378
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file

Download