DynDom - Protein Domain Motions

Sucrose Hydrolase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Sucrose Hydrolase
Conformer 1 (PDB)	3czg (A)
Conformer 2 (PDB)	3czk (A)
Window Length	11
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	363	0.53	80 - 124 136 - 137 141 - 143 145 - 169 317 - 633
2	221	0.56	11 - 79 125 - 135 138 - 140 144 - 144 170 - 316

Sequence

`________________________________________________________________________79__________________________________________124_` `3czg(A) : IDPPALRAAFAGPLDPQHAEVLLSRYDQHASRLLDALHALYGQRADYASWLAQWLGEVGDIARQRPQALQTLDSTRHAGWFGQPH-lGYSAYADRFAGTLQGVAERVPYLQELGVRYLHL` `:` `3czk(A) : IDPPALRAAFAGPLDPQHAEVLLSRYDQHASRLLDALHALYGQRADYASWLAQWLGEVGDIARQRPQALQTLDSTRHAGWFGQPHMLGYSAYADRFAGTLQGVAERVPYLQELGVRYLHL` `________________________________________________________________________79__________________________________________124_` `_______135__140__________________________169____________________________________________________________________________` `3czg(A) : LPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQV------gNFTWVDDTAQW-wTTFY` `:` `3czk(A) : LPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQVFPHTAPGNFTWVDDTAQWMWTTFY` `_______135__140__________________________169____________________________________________________________________________` `____________________________________________________________________316_________________________________________________` `3czg(A) : PYQWDLNWSNPAVFGD-aLA-lRLANLGVEAFRLDSTAYLWKRIGTDC-nQSEAHTLLVALRAVTDIVAPAVV-kAEAIVP-tQLPPYFGSGVDEGHECHLAYHSTL-aAGWSALALQRG` `:` `3czk(A) : PYQWDLNWSNPAVFGDMALAMLRLANLGVEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVAPAVVMKAQAIVPMTQLPPYFGSGVDEGHECHLAYHSTLMAAGWSALALQRG` `____________________________________________________________________316_________________________________________________` `________________________________________________________________________________________________________________________` `3czg(A) : DILHNVIAHSPPLPRHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESF-gVHGTNG-aAALAGIQAAQEAGDAAALAVAVDRLVLLYAIALA-pGVPL` `:` `3czk(A) : DILHNVIAHSPPLPRHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQgVHGTNGMAAALAGIQAAQEAGDAAALAVAVDRLVLLYAIALAMPGVPL` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `3czg(A) : IY-gDELA-vNDPGYRDDPHRQHEGRWLHRPA-dWQLAAQRHDAKSLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSDQLLDVELAAIGVDGWTLL-` `:` `3czk(A) : IYMGDELAMVNDPGYRDDPHRQHEGRWLHRPAMDWQLAAQRHDAKSLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSDQLLDVELAAIGVDGWTLLr` `________________________________________________________________________________________________________________________` `__________________` `3czg(A) :` `---sIVLPPYGVRWLQRG` `:` `3czk(A) :` `GDGSIVLPPYGVRWLQRG` `__________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	4.5
Translation (A)	0.0
Closure (%)	90.9
Bending Residues ( green )	79 - 80 124 - 125 135 - 138 140 - 141 143 - 145 169 - 170 316 - 317
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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