Sugar Abc Transporter, Periplasmic Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sugar Abc Transporter, Periplasmic Sugar-Binding Protein
  Conformer 1
(PDB) 		3c6q (A)
  Conformer 2
(PDB) 		3c6q (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 154 0.88   104 - 235   282 - 303
2 147 0.6   3 - 103   236 - 281

Sequence


           ___________________________________________________________________________________________________102__________________ 
 3c6q(A) : MLTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKCDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELL 
         :                                                                                                                          
 3c6q(C) : MLTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKCDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELL 
           ___________________________________________________________________________________________________102__________________ 

           ________________________________________________________________________________________________________________235_____ 
 3c6q(A) : GGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDCEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYM 
         :                                                                                                                          
 3c6q(C) : GGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDCEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYM 
           ________________________________________________________________________________________________________________235_____ 

           ____________________________________279__________________________                                                        
 3c6q(A) : MGYLSVTVLYLMNKIGVQNTLMMLPKVKVDGKVDYVIDTGVDVVTPENLDEYLKKMEELGIPIKF                                                        
         :                                                                                                                          
 3c6q(C) : MGYLSVTVLYLMNKIGVQNTLMMLPKVKVDGKVDYVIDTGVDVVTPENLDEYLKKMEELGIPIKF                                                        
           ____________________________________279__________________________                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		37.6
Translation
(A) 		1.4
Closure
(%) 		64.5
Bending Residues
( green ) 		  102 - 106
  235 - 238
  279 - 282
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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