Ubiquitin Carboxyl-Terminal Hydrolase 7

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ubiquitin Carboxyl-Terminal Hydrolase 7
  Conformer 1
(PDB) 		1nb8 (A)
  Conformer 2
(PDB) 		1nb8 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 287 0.57   210 - 329   334 - 334   339 - 368   390 - 549
2 29 0.52   330 - 333   335 - 338   369 - 389

Sequence


           _________________________________________________________________________________________________________________329_333 
 1nb8(A) : KKHTGYVGLKNQGATCYnSLLQTLFFTNQLRKAVYpTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFqHDVQELCRVLLDNVENKkGTCVEGTIPKLFRGKvSYIQ 
         :                                                                                                                          
 1nb8(B) : KKHTGYVGLKNQGATCYnSLLQTLFFTNQLRKAVYpTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFqHDVQELCRVLLDNVENKkGTCVEGTIPKLFRGKvSYIQ 
           _________________________________________________________________________________________________________________329_333 

           __338___________________________368__________________389________________________________________________________________ 
 1nb8(A) : CKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLrFiKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGG 
         :                                                                                                                          
 1nb8(B) : CKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLrFiKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGG 
           __338___________________________368__________________389________________________________________________________________ 

           ____________________________________________________________________________________                                     
 1nb8(A) : HYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHhCTNAYlVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQK*                                     
         :                                                                                                                          
 1nb8(B) : HYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHhCTNAYlVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKR                                     
           ____________________________________________________________________________________                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.6
Translation
(A) 		0.0
Closure
(%) 		2.4
Bending Residues
( green ) 		  329 - 330
  333 - 335
  338 - 339
  368 - 369
  389 - 390
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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