Adenosylhomocysteinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenosylhomocysteinase
  Conformer 1
(PDB)
5tow (A)
  Conformer 2
(PDB)
3x2e (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 218 1.77   7 - 160   282 - 285   325 - 389
2 141 0.41   180 - 281   286 - 324

Sequence


           ________________________________________________________________________________________________________________________ 
 5tow(A) : *NTGEMKINWVSRYMPLLNKIAEEYSREKPLSGFTVGMSIHLEAKTAYLAITLSKLGAKVVITGSNPLSTQDDVAEALRSKGITVYARRTHDESIYRENLMKVLDERPDFIIDDGGDLTV 
         :                                                                                                                          
 3x2e(A) : ANTGEMKINWVSRYMPLLNKIAEEYSREKPLSGFTVGMSIHLEAKTAYLAITLSKLGAKVVITGSNPLSTQDDVAEALRSKGITVYARRTHDESIYRENLMKVLDERPDFIIDDGGDLTV 
           ________________________________________________________________________________________________________________________ 

           _____________________________________160________________________________________________________________________________ 
 5tow(A) : ISHTEREEVLENLKGVSEETTTGVRRLKALEETGKLRVPVIAVNDSKM------rYGTGQSTWDAIMRNTNLLVAGKNVVVAGYGWCGRGIALRAAGLGARVIVTEVDPVKAVEAIMDGF 
         :                                                                                                                          
 3x2e(A) : ISHTEREEVLENLKGVSEETTTGVRRLKALEETGKLRVPVIAVNDSKMKYLFDNRYGTGQSTWDAIMRNTNLLVAGKNVVVAGYGWCGRGIALRAAGLGARVIVTEVDPVKAVEAIMDGF 
           _____________________________________161________________________________________________________________________________ 

           ______________________________________281_285____________________________________324____________________________________ 
 5tow(A) : TVMPMKEAVKIADFVITASGNTDVLSKEDILSLKDGAVLANAGHFNVEIPVRVLEEIAVEKFEARPNVTGYTLENGKTVFLLAEGRLVN-----gHPVEIMDLSFALQIFAVLYLLENHR 
         :                                                                                                                          
 3x2e(A) : TVMPMKEAVKIADFVITASGNTDVLSKEDILSLKDGAVLANAGHFNVEIPVRVLEEIAVEKFEARPNVTGYTLENGKTVFLLAEGRLVNLAAGDGHPVEIMDLSFALQIFAVLYLLENHR 
           ______________________________________282_286____________________________________325____________________________________ 

           _________________________________________                                                                                
 5tow(A) : KMSPKVYMLPDEIDERVARMKLDSLGVKIDELTEKQRRYL*                                                                                
         :                                                                                                                          
 3x2e(A) : KMSPKVYMLPDEIDERVARMKLDSLGVKIDELTEKQRRYLR                                                                                
           _________________________________________                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.1
Translation
(A)
1.3
Closure
(%)
95.6
Bending Residues
( green )
  160 - 183
  281 - 282
  285 - 288
  324 - 339
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

Download and extract PyMOL PML script file Download