DynDom - Protein Domain Motions

Glycerol Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Glycerol Kinase
Conformer 1 (PDB)	1bwf (O)
Conformer 2 (PDB)	1bwf (Y)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	270	0.33	4 - 249 291 - 292 438 - 463
2	220	0.32	250 - 290 293 - 437 464 - 497

Sequence

`________________________________________________________________________________________________________________________` `1bwf(O) : EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSWTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLE` `:` `1bwf(Y) : EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSWTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLE` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1bwf(O) : DYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGtRIPISGIAGD` `:` `1bwf(Y) : DYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGtRIPISGIAGD` `________________________________________________________________________________________________________________________` `248_______________________________________290___________________________________________________________________________` `1bwf(O) : QQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIF` `:` `1bwf(Y) : QQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIF` `248_______________________________________290___________________________________________________________________________` `_____________________________________________________________________437_______________________463______________________` `1bwf(O) : GLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAG` `:` `1bwf(Y) : GLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAG` `_____________________________________________________________________437_______________________463______________________` `______________` `1bwf(O) : WKKAVKRAMAWEEH` `:` `1bwf(Y) : WKKAVKRAMAWEEH` `______________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	6.4
Translation (A)	-0.4
Closure (%)	89.3
Bending Residues ( green )	248 - 250 290 - 293 437 - 438 463 - 464
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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