Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glyceraldehyde-3-Phosphate Dehydrogenase
  Conformer 1
(PDB) 		5jyf (A)
  Conformer 2
(PDB) 		5jy6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 215 0.73   37 - 55   131 - 144   151 - 332
2 105 0.87   4 - 36   56 - 130   145 - 150

Sequence


           _______________________________34__________________54___________________________________________________________________ 
 5jyf(A) : VVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPNMLAHLLKYDTTQGRFDGTVEVKEGGFEVNGQFVKVSAEREPANIDWATDGVEIVLEATGF------aEQHIHE-gAKKVVIT 
         :                                                                                                                          
 5jy6(A) : VVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPNMLAHLLKYDTTQGRFDGTVEVKEGGFEVNGQFVKVSAEREPANIDWATDGVEIVLEATGFFASKEKAEQHIHENGAKKVVIT 
           _______________________________34__________________54___________________________________________________________________ 

           ______130___136___________150___________________________________________________________________________________________ 
 5jyf(A) : AP--nDVKTVVFNTNHDILDGTETVISGASCTTNCLAPMAKALQDNFGVKQGLMTTIHAYTGDQMILDGPHRGGDLRRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVPTG 
         :                                                                                                                          
 5jy6(A) : APGGNDVKTVVFNTNHDILDGTETVISGASCTTNCLAPMAKALQDNFGVKQGLMTTIHAYTGDQMILDGPHRGGDLRRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVPTG 
           ______130___136___________150___________________________________________________________________________________________ 

           ______________________________________________________________________________________________                           
 5jyf(A) : SVTELVATLEKDVTVEEVNAAMKAAANDSYGYTEDPIVSSDIVGISYGSLFDATQTKVQTVDGNQLVKVVSWYDNEMSYTSQLVRTLEYFAKI*                           
         :                                                                                                                          
 5jy6(A) : SVTELVATLEKDVTVEEVNAAMKAAANDSYGYTEDPIVSSDIVGISYGSLFDATQTKVQTVDGNQLVKVVSWYDNEMSYTSQLVRTLEYFAKIA                           
           ______________________________________________________________________________________________                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.5
Translation
(A) 		0.1
Closure
(%) 		71.7
Bending Residues
( green ) 		  34 - 40
  54 - 56
  130 - 131
  136 - 145
  150 - 153
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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