Glycine Receptor Subunit Alphaz1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycine Receptor Subunit Alphaz1
  Conformer 1
(PDB) 		3jad (E)
  Conformer 2
(PDB) 		3jae (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 185 1.14   34 - 157   171 - 230   232 - 232
2 136 1.32   158 - 170   231 - 231   233 - 357

Sequence


           ________________________________________________________________________________________________________________________ 
 3jad(E) : APSEFLDKLMGKVSGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRISKNGNVLY 
         :                                                                                                                          
 3jae(E) : APSEFLDKLMGKVSGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRISKNGNVLY 
           ________________________________________________________________________________________________________________________ 

           __________157__________170_________________________________________________________230__________________________________ 
 3jad(E) : SIRITLVLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWDEKGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDA 
         :                                                                                                                          
 3jae(E) : SIRITLVLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWDEKGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDA 
           __________157__________170_________________________________________________________230__________________________________ 

           __________________________________________________________________________________________________                       
 3jad(E) : APARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFIAR-kLFISRAKRIDTVSRVAFPLVFLIFNIFYWITYKLV                       
         :                                                                                                                          
 3jae(E) : APARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFIARAkLFISRAKRIDTVSRVAFPLVFLIFNIFYWITYKLV                       
           __________________________________________________________________________________________________                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.1
Translation
(A) 		-1.1
Closure
(%) 		30.7
Bending Residues
( green ) 		  157 - 158
  170 - 171
  230 - 233
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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