DynDom - Protein Domain Motions

Glycosyl Transferase, Group 1 Family Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Glycosyl Transferase, Group 1 Family Protein
Conformer 1 (PDB)	7vfk (A)
Conformer 2 (PDB)	7vfl (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	327	0.5	2 - 306 410 - 412 479 - 497
2	166	0.63	307 - 409 413 - 478

Sequence

`________________________________________________________________________________________________________________________` `7vfk(A) : SMNYFVGNSLGVNLTGIEKAIINRLNLFKEMGRPAQCVFLSWNRYLYRNAQNYITSSDYINMYDFFQEATYLERNEPFDWLSYWTDECHYTLKHVENSHDFRIYDQERFLMYAHFQDPKY` `:` `7vfl(A) : AMNYFVGNSLGVNLTGIEKAIINRLNLFKEMGRPAQCVFLSWNRYLYRNAQNYITSSDYINMYDFFQEATYLERNEPFDWLSYWTDECHYTLKHVENSHDFRIYDQERFLMYAHFQDPKY` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `7vfk(A) : RILDYVNHFDSQRRKVKRDFYDVRGFLSCSRILVDKQQTLCEFFYNPEGDTKLEKYFSYKDGKPEVQKIIVYYANKQYFFNNETELGAFFIKQLYQHGDLFFSDRNVYTAPIFNLTPESI` `:` `7vfl(A) : RILDYVNHFDSQRRKVKRDFYDVRGFLSCSRILVDKQQTLCEFFYNPEGDTKLEKYFSYKDGKPEVQKIIVYYANKQYFFNNETELGAFFIKQLYQHGDLFFSDRNVYTAPIFNLTPESI` `________________________________________________________________________________________________________________________` `________________________________________________________________306_____________________________________________________` `7vfk(A) : PVVAVLHSTHIKNIDALDSSPFKNVYKAMFENLSRYRAIIVSTEQQKLDVEKRINHTIPVVNIPVGYSETIDTPVQTL---sVKLISVARYSPEKQLHQQIELIKRLVSYVPKIELHMYG` `:` `7vfl(A) : PVVAVLHSTHIKNIDALDSSPFKNVYKAMFENLSRYRAIIVSTEQQKLDVEKRINHTIPVVNIPVGYSETIDTPVQTLDQRSVKLISVARYSPEKQLHQQIELIKRLVSYVPKIELHMYG` `________________________________________________________________306_____________________________________________________` `______________________________________________408_412_______________________________________________________________478_` `7vfk(A) : FGSESKKLNELIQKYGLENHVYLRGFLSNLDQEYSDAYLSLITSNMEGFSLALLESLAHGVPVISYDIKYGPNELITSDFNGYLITKNDEDALFDKVKYVIDHPEVQQRLSKGSLAKAQQ` `:` `7vfl(A) : FGSESKKLNELIQKYGLENHVYLRGFLSNLDQEYSDAYLSLITSNMEGFSLALLESLAHGVPVISYDIKYGPNELITSDFNGYLITKNDEDALFDKVKYVIDHPEVQQRLSKGSLAKAQQ` `______________________________________________408_412_______________________________________________________________478_` `______________________` `7vfk(A) : YSKASLIKQWDQFVRLILEHHH` `:` `7vfl(A) : YSKASLIKQWDQFVRLILEH**` `______________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	13.6
Translation (A)	-0.8
Closure (%)	99.9
Bending Residues ( green )	306 - 316 408 - 410 412 - 418 478 - 486
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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