DynDom - Protein Domain Motions

Luciferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Luciferase
Conformer 1 (PDB)	1lci
Conformer 2 (PDB)	1ba3
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	426	0.33	7 - 442 448 - 450
2	91	0.67	443 - 447 451 - 541

Sequence

`________________________________________________________________________________________________________________________` `1lci : *AKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ` `:` `1ba3 : DAKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1lci : PTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNS---lPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH` `:` `1ba3 : PTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSsTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1lci : HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG---pGAVGK` `:` `1ba3 : HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGK` `________________________________________________________________________________________________________________________` `__________________________________________________________________433___________447_____________________________________` `1lci : VVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIV-----lIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAV` `:` `1ba3 : VVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAV` `__________________________________________________________________433___________447_____________________________________` `____________________________________________________________` `1lci : VVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPk-----LDARKIREILIKAKK` `:` `1ba3 : VVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKK` `____________________________________________________________`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.

play backwards

pause

play forwards

Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	4.0
Translation (A)	0.5
Closure (%)	30.7
Bending Residues ( green )	433 - 443 447 - 451
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file

Download