Manganese-Dependent Inorganic Pyrophosphatase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Manganese-Dependent Inorganic Pyrophosphatase
  Conformer 1
(PDB) 		1k20 (A)
  Conformer 2
(PDB) 		1i74 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 184 0.52   4 - 192
2 115 0.54   193 - 308

Sequence


           ________________________________________________________________________________________________________________________ 
 1k20(A) : SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETANPLYMRLEPVGSA 
         :                                                                                                                          
 1i74(B) : SKILVFGHQNPDSDAIGSS-aYAYLKRQ-LGVDAQAVALGNPNEETAFVLDYFGIQAPPVVKSAQAEGAKQVILTDHNEFQQSIADIREVEVVEVVDHHRVANFETANPLY-rLEPVGSA 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________189____________________________________________________ 
 1k20(A) : SSIVYRMFKEHSVAVSKEIAGLMLSGLISDTLLLKSPTTHPTDKAIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAIE 
         :                                                                                                                          
 1i74(B) : SSIVYRLYKENGVAIPKEIAGV-lSGLISDTLLLKSPTTHASDPAVAEDLAKIAGVDLQEYGLA-lKAGTNLASKTAAQLVDIDAKTFELNGSQVRVAQVNTVDINEVLERQNEIEEAIK 
           _________________________________________________________________187____________________________________________________ 

           ______________________________________________________________________                                                   
 1k20(A) : KAIADNGYSDFVLMITDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKKQVVPQLTESFNA                                                   
         :                                                                                                                          
 1i74(B) : ASQAANGYSDFVL-iTDILNSNSEILALGNNTDKVEAAFNFTLKNNHAFLAGAVSRKKQVVPQLTESFNG                                                   
           ______________________________________________________________________                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.8
Translation
(A) 		-0.2
Closure
(%) 		94.5
Bending Residues
( green ) 		  189 - 193
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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